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“It’s really a complete ghost town now,” said Stephen Weisbrot, from a powerless 10th-floor apartment.

It could be several days to a week before all residents who lost power during the storm get their lights back, Miksad said.

Water surged into two major commuter tunnels — the Brooklyn Battery and the Queens Midtown — along with seven subway tunnels under the East River. The agency is assessing damage and will restore the system as quickly as it can, MTA Chairman Joseph Lhota said.

On Tuesday, the New York Stock Exchange was to be closed again — the first time it’s been closed for two consecutive days due to weather since 1888, when a blizzard struck the city.

At 4 a.m., few people were out on the streets. Times Square was lit but empty of people. Round-the-clock restaurants and bars that would have been wrapping up after last call were closed. Only a handful of taxis plied the streets — but there was an abundance of emergency and police vehicles.

Uptown, windows of apartments and businesses glowed. But to cross through midtown was to be swallowed by darkness. Only a few emergency or backup lights appeared in buildings.

Late Monday, an explosion at a substation at 14th Street and FDR Drive contributed to the power outages. No one was injured, and ConEd did not know whether the explosion was caused by flooding or by flying debris.

Earlier in the day, another 1 million customers lost power in New York City, the northern suburbs and coastal Long Island, where floodwaters swamped cars, downed trees and put neighborhoods under water.

At least five people were killed in the New York City area, most by falling trees.

On coastal Long Island, floodwaters swamped cars, downed trees and put neighborhoods under water as beachfronts and fishing villages bore the brunt of the storm. A police car was lost rescuing 14 people from the popular resort Fire Island.

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Associated Press writers Karen Matthews, Colleen Long and Deepti Hajela in New York, Larry Neumeister, Frank Eltman and Meghan Barr on Long Island, and Seth Borenstein in Kensington, Md., contributed to this report.